1. Abu Kwaik, Y., B.L. Eisenstein, and N.G. Engleberg. 1993.Phenotypic modulation by Legionella pneumophila upon infection of macrophages.Infect Immun. Apr;61(4):1320-1329.
2. Abu Kwaik, Y., L.Y. Gao, O.S. Harb, and B.J. Stone. 1997. Transcriptional regulation of the macrophage-induced gene (gspA) of Legionella pneumophila and phenotypic characterization of a null mutant. Mol Microbiol. May;24(3):629-42.
3. Alms, G., P. Sanz, M. Carlson, and T. Haystead. 1999. Reg1p targets protein phosphatase 1 to dephosphorylate hexokinase II in Saccharomyces cerevisiae: characterizing the effects of a phosphatase subunit on the yeast proteome. EMBO J. 18: 4157-4168.
4. Altaie, S.S., and D.L. Cox.1991. Identification of T. pallidum polypeptides: a comparative study between the protein profiles of in vitro cultivated and in vivo propagated Treponema pallidum subsp. pallidum by two-dimensional polyacrylamide gel electrophoresis. Appl Theor Electrophor. 1991;1(6):291-304.
5. Andersen, H., G. Christiansen, and C. Christiansen. 1984. Electrophoretic analysis of proteins from Mycoplasma capricolum and related serotypes using extracts from intact cells and from minicells containing cloned mycoplasma DNA. J Gen Microbiol. 130 ( Pt 6):1409-18.
6. Andersen, P.1994. Effective vaccination of mice against Mycobacterium tuberculosis infection with a soluble mixture of secreted mycobacterial proteins. Infect Immun. 1994 Jun;62(6):2536-44.
7. Anderson, N.L., and N.G. Anderson. 1998. Proteome and proteomics: new technologies, new concepts, and new words. Electrophoresis. 1998 Aug;19(11):1853-61.
8. Antelman, H., C. Scharf, and M. Hecker. 2000. Phosphate starvation-inducible proteins of Bacillus subtilis: proteomics and transcriptional analysis. J.Bacteriol, 182:4478-4490.
9. Atherton, J.C. 1998. H. pylori virulence factors. Br Med Bull. 54(1):105-20.
10. Babiker, H.A., A.M. Creasey, B. Fenton, R.A. Bayoumi, D.E. Arnot, and D. Walliker. 1991. Genetic diversity of Plasmodium falciparum in a village in eastern Sudan. 1. Diversity of enzymes, 2D-PAGE proteins and antigens. Trans R Soc Trop Med Hyg. 85(5):572-7.
11. Babiker, H.A., G. Satti, and D. Walliker. 1995. Genetic changes in the population of Plasmodium falciparum in a Sudanese village over a three-year period. Am J Trop Med Hyg. 53(1):7-15.
12. Berndt, P., U. Hobohm, and H. Langen. Reliable automatic protein identification from matrix-assisted laser desorption/ionization mass spectrometric peptide fingerprints. Electrophoresis 20, 3521-3526 (1999).
13. Betts, J. C., W.P. Blackstock, M.A. Ward, and B.H. Anderton. 1997. Identification of phosphorylation sites on neurofilament proteins by nanoelectrospray mass spectrometry. J.Biol. Chem. 272, 12922-12927.
14. Blattner, F. R., G, Plunkett, C.A. Bloch, N.T. Perna, V. Burland, M. Riley, J. Collado-Vides, J.D. Glasner, C.K. Rode, G.F. Mayhew J. Gregor, N.W. Davis, H.A. Kirkpatrick, M:A. Goeden, D.J. Rose, B. Mau, B, and Y Shao. 1997. The complete genome sequence of Escherichia coli K-12. Science.277, 1453-1474.
15. Brenner, S.E. 1999. Errors in genome annotation. Trends Genet. 15, 132-133.
16. Buchmeier, N.A., and F. Heffron. 1990. Induction of Salmonella stress proteins upon infection of macrophages. Science. May 11;248(4956):730-2.
17. Cash P., E. Argo, and K.D. Bruce.1995, Characterisation of Haemophilus influenzae proteins by two-dimensional gel electrophoresis. Electrophoresis. 16(1):135-48.
18. Cash, P., E. Argo, L. Ford, L. Lawrie, and H. McKenzie. 1999. A proteomic analysis of erythromycin resistance in Streptococcus pneumoniae. Electrophoresis. 20: 2259-2268.
19. Caspary, F., A. Shevchenko, M. Wilm, and B. Séraphin. 1999. Partial purification of the yeast U2 snRNP reveals a novel yeast pre-mRNA splicing factor required for pre-spliceosome assembly. EMBO J. 18: 3463-3474.
20. Chevallet, M., V. Santoni, A. Poinas, D. Rouquié, A. Fuchs, S. Keiffer, M. Rossignol, J. Lunardi, J. Garin, and T. Rabilloud. 1998. New zwitterionic detergents improve the analysis of membrane proteins by two-dimensional electrophoresis. Electrophoresis. 19: 1901-1909.
21. Claverie, J.M. 1997. Computational methods for the identification of genes in vertebrate genomic sequences. Hum.Mol.Genet. 6, 1735-1744.
22. Cordwell, S., A. Nouwens, N. Verrills, J. McPherson, P. Hains, D. Van Dyk, and B. Walsh. 1999. The microbial proteome database - an automated laboratory catalogue for monitoring protein expression in bacteria. Electrophoresis. 20: 3580-3588.
23. Cortez, D., Y. Wang, J. Qin, and S.J. Elledge.1999. Requirement of ATM-dependent phosphorylation of brca1 in the DNA damage response to double-strand breaks. Science 286, 1162-1166.
24. Costanzo, M., J. Hogan , M. Cusick, B. Davis, A. Fancher, P. Hodges, P. Kondu, C. Lengieza, J. Lew-Smith, C. Linger, et al., 2000. The Yeast Proteome Database (YPD) and Caenorhabditis elegans Proteome Database (WormPD): comprehensive resources for the organization and comparison of model organism protein information. Nucleic Acids Res. 28: 73-76.
25. Costas, M. 1992. Adv. Electrophor. 5, 351-408.
26. Dainese-Hatt, P., H.M. Fischer, H. Hennecke, and P. James. 1999. Classifying symbiotic proteins from Bradyrhizobium japonicum into functional groups by proteome analysis of altered gene expression levels. Electrophoresis. 20: 3514-3520.
27. Deiwick, J., and M. Hensel. 1999. Regulation of virulence genes by environmental signals in Salmonella typhimurium. Electrophoresis. Apr-May;20(4-5):813-7.
28. D'Mello, R.A., P.R. Langford and J.S. Kroll. 1997. Role of bacterial Mn-cofactored superoxide dismutase in oxidative stress responses, nasopharyngeal colonization, and sustained bacteremia caused by Haemophilus influenzae type b. Infect Immun. 1997 Jul;65(7):2700-6.
29. Dunham, I., N. Shimizu, B.A. Roe, S. Chissoe, A.R. Hunt, J.E. Collins, R. Bruskiewich, D.M. Beare, M. Clamp, L.J. Smink, R. Ainscough, J.P. Almeida, A. Babbage, C. Bagguley, J. Bailey, K. Barlow, K.N. Bates, O Beasley, C.P. Bird, S. Blakey, A.M. Bridgeman, D. Buck, J. Burgess, W.D. Burrill, K.P. O'Brien, et al. 1999. The DNA sequence of human chromosome 22, Nature 402, 489-495.
30. Dunn, B.E., G.L. Perez-Perez, and M.J. Blazer. 1989. Two-dimensional gel electrophoresis and immunoblotting of Campylobacter pylori proteins. Infect Immun. 57(6):1825-33. 42.
31. Eberharter, A., D. Sterner, D. Schieltz, A. Hassan, J. Yates, S. Berger, and J. Workman. 1999. The ADA complex is a distinct histone acetyltransferase complex in Saccharomyces cerevisiae. Mol Cell Biol.9: 6621-6631.
32. Eisenberg, D., E.M. Marcotte, I. Xenarios, and T.O. Yeates. 2000. Protein function in the post-genomic era. Nature. 15;405(6788):823-6.
33. Fleischmann, R.D., M.D. Adams, O. White, R.A. Clayton, E.F. Kirkness, A.R. Kerlavage, C.J. Bult, J.F. Tomb, B.A. Dougherty, J.M. Merrick, et al. 1995. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science. 1995 Jul 28;269(5223):496-512.
34. Fortes, P., D. Bilbao-Cortés, M. Fornerod, R. Rigaut, W. Raymond, B. Séraphin, and I. Mattaj. 1999. Luc7p, a novel yeast U1 snRNP protein with a role in 5' splice recognition. Genes Dev. 13: 2425-2438.
35. Fountoulakis, M., B. Takacs, and H. Langen.1998. Two-dimensional map of basic proteins of Haemophilus influenzae. Electrophoresis.19(5):761-6.
36. Fountoulakis, M., M.F. Takács, P. Berndt, H. Langen, and B. Takács. 1999. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Electrophoresis. 20: 2181-2195.
37. Fountoulakis, M., M.F.Takács, and BTakács. 1999. Enrichment of low-copy-number gene products by hydrophobic interaction chromatography. J Chromatogr. 833: 157-168.
38. Fountoulakis,M., H. Lagen, S. Evers, C. Gray, and B. Takacs. 1997. Two-dimensional map of Haemophilus influenzae following protein enrichment by heparin chromatography. Electrophoresis, 18, 1193-1202.
39. Fraser, C.M., S. Casjens, W.M. Huang, G.G. Sutton, R. Clayton, R. Lathigra, O. White, K.A., Ketchum, R. Dodson, E.K. Hickey, M. Gwinn, B. Dougherty, J.F. Tomb, R.D. Fleischmann, D. Richardson, J. Peterson, A.R. Kerlavage, J. Quackenbush, S. Salzberg, M. Hanson, R. van Vugt, N. Palmer, M.D. Adams, J. Gocayne. J.C. Venter, et al. 1997. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature. 11;390(6660):580-6.
40. Fraser, C.M., J.D. Gocayne, O, White, M.D. Adams, R.A. Clayton, R.D.Fleischmann, C.J. Bult, A.R. Kerlavage, G. Sutton, J.M. Kelley, et al. 1995. The minimal gene complement of Mycoplasma genitalium. Science. 1995 Oct 20;270(5235):397-403.
41. Fraser, C.M., S.J. Norris, G.M. Weinstock, O. White, G.G. Sutton, R. Dodson, M. Gwinn, E.K. Hickey, R. Clayton, K.A. Ketchum, E. Sodergren, J.M. Hardham, M.P. McLeod, S. Salzberg, J. Peterson, H. Khalak, D. Richardson, J.K. Howell, M. Chidambaram, T. Utterback, L. McDonald, P. Artiach, C. Bowman, M.D. Cotton, J.C. Venter, et al. 1998. Complete genome sequence of Treponema pallidum, the syphilis spirochete. Science. 1998 Jul 17;281(5375):375-88.
42. Futcher, B., G. Latter, P. Monardo, C. McLaughlin, and J. Garrels. 1999. A sampling of the yeast proteome. Mol Cell Biol . 19: 7357-7368.
43. Godovac-Zimmermann, J., V. Soskic, S. Poznanovic, and F. Brianza. 1999. Functional proteoma of signal transduction by membrane receptors. Electrophoresis. 20: 952-961.
44. Goode, B., J. Wong, A.C. Butty, M. Peter, A. McCormack, J. Yates, D. Drubin, and G. Barnes. 1999. Coronin promotes the rapid assembly and cross-linking of actin filaments and may link the actinand microtubule cytoskeletons in yeast. J Cell Biol. 144: 83-98.
45. Gormon, T., and L. Phan-Thanh. 1995. Identification and classification of Listeria by two-dimensional protein mapping. Res Microbiol Feb;146(2):143-54.
46. Guerreiro, N., M. Djordjevic, and B. Rolfe. 1999. Proteome analysis of the model microsymbiont Sinorhizobium meliloti: isolation and characterization of novel proteins. Electrophoresis. 20: 818-825.
47. Gygi, S., B. Rist, S. Gerber, F. Turecek, M. Gelb, and R. Aebersold. 1999. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol. 17: 994-999.
48. Gygi, S., Y. Rochon, B.R. Franza, and R. Aebersold. 1999. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19, 1720-1730.
49. Hansen, E.J., R.M. Wilson, W.A. Clyde, and J.B. Baseman. 1981. Characterization of hemadsorption-negative mutants of Mycoplasma pneumoniae. Infect Immun. Apr;32(1):127-36.
50. Heithoff, D.M., C.P. Conner, P.C. Hanna, S.M. Julio, U. Hentschel, and M.J. Mahan. 1997. Bacterial infection as assessed by in vivo gene expression. Proc Natl Acad Sci U S A. Feb 4;94(3):934-9.
51. Hensel, M., J.E. Shea, C. Gleeson, M.D. Jones, E. Dalton, and D.W. Holden. 1995. Simultaneous identification of bacterial virulence genes by negative selection. Science. Jul 21;269(5222):400-3.
52. Henzel, W. J., T.M. Billeci, J.T. Stults, and S.C. Wong. 1993. Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc. Natl Acad. Sci. USA 90, 5011-5015.
53. Herbert, B. 1999. Advances in protein solubilisation for two-dimensional electrophoresis. Electrophoresis. 20: 660-663.
54. Himmelreich, R., H. Hilbert, H. Plagens, E. Pirkl, B.C. Li, and R. Herrmann. 1996. Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res.15;24(22):4420-49.
55. Hochstrasser, D.F. Proteome in perspective. Clin Chem Lab Med. 1998 Nov;36(11):825-36.
56. Hodges, P.E., W.E. Payne, and J.I. Garrels. 1998. The Yeast Protein Database (YPD): a curated proteome database for Saccharomyces cerevisiae. Nucleic Acids Res.26, 68-72.
57. Houry, W., D. Frishman. C. Eckerskorn, F. Lottspeich, and R. Hartl. 1999. Identification of in vivo substrates of the chaperonin GroEL. Nature. 402: 147-154.
58. Humphery-Smith, I., and W. Blackstock. 1997. Proteome analysis: genomics via the output rather than the input code. J Protein Chem. Jul;16(5):537-44.
59. Humphery-Smith, I., S.J. Cordwell, and W.P. Blackstock. 1997. Proteome research: complementarity and limitations with respect to the RNA and DNA worlds. Electrophoresis. 1997 Aug;18(8):1217-42.
60. Jackson, P., M.J. Thornley, and R.J. Thompson.1984. A study by high-resolution two-dimensional polyacrylamide gel electrophoresis of relationships between Neissería gonorrhoeae and other bacteria. J Gen Microbiol. 130 12:3189-201.
61. Jackson, P., V.E. Urwin, M.R. Torrance, and J.A. Carmen. 1989. The application of high resolution two-dimensional polyacrylamide gel electrophoresis to the identification and purification of a protein, NG8.4, present in Neissería gonorrhoea and the subsequent development of a radioimmunoassay. Electrophoresis. 10(7):456-63.
62. Jensen, O. N., Mortensen, P., Vorm, O. and Mann, M. 1997. Automation of matrix assisted laser desorption/ionization mass spectrometry using fuzzy logic feedback control. Anal. Chem. 69, 1706-1714.
63. Jensen, P., L. Paa-Tolic, G. Anderson, J. Horner, M. Lipton, J. Bruce, and R. Smith. 1999. Probing proteomes using capillary isoelectric focusing-electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Anal Chem. 71: 2076-2084.
64. Jungblut, P.R., D. Bumann, G. Haas, U. Zimny-Arndt, P. Holland, S. Lamer, F. Siejak, A. Aebischer, and T.F. Meyer. 2000. Comparative proteome analysis of Helicobacter pylori. Mol Microbiol. 36:710-25.
65. Jungblut, P., U. Schaible, H.J. Mollenkopf, U. Zimny-Arndt, B. Raupach, J. Mattow, P. Halada, S. Lamer, K. Hagens, and S. Kaufmann. 1999. Comparative proteome analysis of Mycobacterium tuberculosis and Mycobacterium bovis BCG strains: towards functional genomics of microbial pathogens. Mol Microbiol. 33: 1103-1117.
66. Klimpel, K.W., and V.L. Clark.1988. Multiple protein differences exist between Neissería gonorrhoeae type 1 and type 4. Infect Immun. 56(4):808-14.
67. Klose, J. 1999. Genotypes and phenotypes. Electrophoresis, 20, 643-652.
68. Konkel, M.E., and W. Cieplak. 1992. Altered synthetic response of Campylobacter jejuni to cocultivation with human epithelial cells is associated with enhanced internalization. Infect Immun. Nov;60(11):4945-9.
69. Konkel, M.E., D.J. Mead, and W. Cieplak. 1993. Kinetic and antigenic characterization of altered protein synthesis by Campylobacter jejuni during cultivation with human epithelial cells. J Infect Dis. 1993 Oct;168(4):948-54.
70. Krogh, A. In ghide to Human Genome Computing (ed. Bishop,M.J.)261-274. Academic, San Diego,1998.
71. Kwaik, Y.A., and O.S. Harb. 1999. Phenotypic modulation by intracellular bacterial pathogens. Electrophoresis. Aug;20(11):2248-58.
72. Laal, S., K.M. Samanich, M.G. Sonnenberg, S. Zolla-Pazner, J.M. Phadtare, and J.T. Belisle.1997.Human humoral responses to antigens of Mycobacterium tuberculosis: immunodominance of high-molecular-mass antigens. Clin Diagn Lab Immunol. 1997 Jan;4(1):49-56.
73. Langen. H., B. Takacs, S. Evers, P. Berndt, H.W. Lahm, B. Wipf, C. Gray, and M. Fountoulakis. 2000. Two-dimensional map of the proteome of Haemophilus influenzae. Electrophoresis. 21:411-29.
74. Lee, J., C. Godon, G. Lagniel, D. Spector, J. Garin, J. Labarre, and M. Toledano. 1999. Yap1 and Skn7 control two specialized oxidative stress response regulons in yeast. J Biol Chem. 274: 16040-16046.
75. Lemos, J.A., M. Giambiagi-Demarval, A. C. Castro. 1998. Expression of heat-shock proteins in Streptococcus pyogenes and their immunoreactivity with sera from patients with streptococcal diseases. J Med Microbiol. Aug;47(8):711-5.
76. Lin, J., and T.A. Ficht. Protein synthesis in Brucella abortus induced during macrophage infection. Infect Immun. 1995 Apr;63(4):1409-14.
77. Link, A.J., L. G. Hays, E.B. Carmack, and J.R. Yates. 1997. Identifying the major proteome components of Haemophilus influenzae type-strain NCTC 8143. Electrophoresis. 18(8):1314-34.
78. Loeb, M.R., and D.H. Smith.1980. Outer membrane protein composition in disease isolates of Haemophilus influenzae: pathogenic and epidemiological implications. Infect Immun. 30(3):709-17.
79. Mahairas, G.G., P.J. Sabo, M. J. Hickey, D.C. Singh, and C. K. Stover. 1996. Protein, Nucleotide Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis. J Bacteriol. 178(5):1274-82.
80. Mahan, M.J., J.W. Tobias, J. M. Slauch, P.C. Hanna, R. J. Collier, and J. J. Mekalanos. 1995. Antibiotic-based selection for bacterial genes that are specifically induced during infection of a host. Proc Natl Acad Sci U S A. 92(3):669-73.
81. Manabe, T. 1999. Capillary electrophoresis of proteins for proteomic studies. Electrophoresis. 20: 3116-3121.
82. Mann, M. Quantitative proteoma? 1999. Nat Biotechnol. 17: 954-955.
83. Meeusen, S., Q.Tieu, E. Wong, E. Weiss, D. Schieltz, J. Yates, J. and Nunnari, J. 1999. Mgm101p is a novel component of the mitochondrial nucleoid that binds DNA and is required for the repair of oxidatively damaged mitochondrial DNA. J Cell Biol. 145: 291-304.
84. Mewes, H., D. Frishman, C. Gruber, B. Geier, D. Haase, A. Kaps, K. Lemcke, G. Mannhaupt, F. Pfeiffer, C. Schüller, et al., 2000 MIPS: a database for genomes and protein sequences. Nucleic Acids Res. 28: 37-40.
85. Mollenkopf, H., P. Jungblut , B. Raupach, J. Mattow , S. Lamer, U. Zimny-Arndt, U. Schaible, and S. Kaufmann. 1999. A dynamic two-dimensional polyacrylamide gel electrophoresis database: the mycobacterial proteome via Internet. Electrophoresis. 20: 2172-2180.
86. Molloy, M., B. Herbert, K. Williams, and A. Ooley. 1999. Extraction of Escherichia coli proteins with organic solvents prior to two-dimensional electrophoresis. Electrophoresis. 20: 701-704
87. Morgan, M.G., H. McKenzie, M.C. Enright, M. Bain, and F.X. Emmanuel. 1992. Use of molecular methods to characterize Moraxella catarrhalis strains in a suspected outbreak of nosocomial infection. Eur J Clin Microbiol Infect Dis. Apr;11(4):305-12.
88. Münchbach, M., P. Dainese, W. Staudenmann, F. Narberhaus, and P. James. 1999. Proteome analysis of heat shock expression in Bradyrhizobium japonicum.Eur J Biochem. 263: 39-48.
89. Musser, J.M., J.S. Kroll, D.M. Granoff, E.R. Moxon, B.R. Brodeur, J. Campos, H. Dabernat, W. Frederiksen, J. Hamel, G. Hammond, et al. 1990. Global genetic structure and molecular epidemiology of encapsulated Haemophilus influenzae. Rev Infect Dis. 1990 12(1):75-111.
90. Neidhardt, F.C., P. L. Bloch, S. Pedersen, and S. Reeh, S. 1977. Chemical measurement of steady-state levels of ten aminoacyl-transfer ribonucleic acid synthetases in Escherichia coli. J Bacteriol. Jan;129(1):378-87.
91. Neidhardt, F.C., J.L. Ingraham, and M. Schaechter.1990. Physiology of the Bacterial Cell: A Molecular Approach, Sinauer Publishing, Sunderland, MA.
92. Neidhardt, F.C., and R.A. VanBogelen. 1981. Positive regulatory gene for temperature-controlled proteins in Escherichia coli.Biochem. Biophys. Res. Comm. 100:894-900.
93. Neubauer, G. and M. Mann. 1999. Mapping of phosphorylation sites of gel-isolated proteins bynanoelectrospray tandem mass spectrometry: potentials and limitations. Anal. Chem. 71,235-242.
94. Niimi, M., R. Cannon, and B. Monk.1999. Candida albicans pathogenicity: a proteomic perspective. Electrophoresis. 20: 2299-2308.
95. Nilsson, C.L., T. Larsson, E. Gustafsson, K.A. Karlsson, and P. Davidsson P. 2000. Identification of protein vaccine candidates from Helicobacter pylori using a preparative two-dimensional electrophoretic procedure and mass spectrometry. Anal.Chem. 72: 2148-2153.
96. Nuwaysir, L.and J.T. Stults. 1993. ESI mass spectrometry of phosphopeptides isolated by on-line immobilized metal affinity chromatography. J. Am. Soc. Mass Spectrom. 4, 662-669.
97. Nystrom, T., H.N. Albertson, K. Flardh, and S. Kjellegerg. 1900. FEMS Microbiol. Ecol., 74, 129-140.
98. Oda, Y., K. Huang, F. Cross, D. Cowburn, and B. Chait. 1999. Accurate quantitation of protein expression and site-specific phosphorylation. Proc Natl Acad Sci USA . 96: 6591-6596.
99. O'Farrell, P. H. 1975. High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250, 4007-4021.
100. Olsson, B., G. Bolske, K. Bergstrom, and K.E. Johansson.1990. Analysis of caprine mycoplasmas and mycoplasma infections in goats using two-dimensional electrophoresis and immunoblotting. Electrophoresis. 11(10):861-9.
101. Pal, P.G., and M.A. Horwitz. 1992. Immunization with extracellular proteins of Mycobacterium tuberculosis induces cell-mediated immune responses and substantial protective immunity in a guinea pig model of pulmonary tuberculosis. Infect Immun. 1992 Nov;60(11):4781-92.
102. Pandey, A., J.S. Andersen, M. and Mann. Use of mass spectrometry to study signaling pathways. Science's STKE (en prensa).
103. Pandley, A . and F. Lewitter. 1999. Nucleotide sequence databases: a gold mine for biologists. Trends Biochem Sci. 24,276-280.
104. Pása-Toli, L., P. Jensen, G. Anderson, M. Lipton, K. Peden, S. Martinovi, N. Toli, J. Bruce, and R. Smith. 1999. High throughput proteome-wide precision measurements of protein expression using mass spectrometry. J Am Chem Soc. 121: 7949-7950.
105. Pedersen, S., P.L. Bloch, S. Reeh, and F.C. Neidhardt. 1978 .Patterns of protein synthesis in E. coli: a catalog of the amount of 140 individual proteins at different growth rates Cell. 14(1):179-90.
106. Perrot, M., F. Segliocco, T. Mini, C. Monribot, U. Schneider, A. Shevchenko, M. Mann, P.Jenö, and H. Boucherie. 1999. Two-dimensional gel protein database of Saccharomyces cerevisiae . Electrophoresis. 20: 2280-2298.
107. Phan-Thanh, L., and F. Mahouin. 1999. A proteomic approach to study the acid response in Listeria monocytogenes. Electrophoresis. 20(11):2214-24.
108. Pitarch, A., M. Pardo, A. Jiménez, J. Pia, C. Gil, M. Sánchez, and C. Nombela. 1999. Two-dimensional gel electrophoresis as analytical tool for identifying Candida albicans immunogenic proteins. Electrophoresis, 20: 1001-1010.
109. Rafie-Kolpin, M., R.C. Essenberg, and J.H. Wyckoff. 1996. Identification and comparison of macrophage-induced proteins and proteins induced under various stress conditions in Brucella abortus. Infect Immun. Dec;64(12):5274-83.
110. Rigaut, G., A. Shevchenko, B. Rutz, M. Wilm, M. Mann, and B. Séraphin. 1999. A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol. 17: 1030-1032.
111. Roberts, A.D., M.G. Sonnenberg, D.J. Ordway, S.K. Furney, P.J. Brennan, J.T. Belisle, and L.M. Orme.1995. Characteristics of protective immunity engendered by vaccination of mice with purified culture filtrate protein antigens of Mycobacterium tuberculosis. Immunology. 1995 Jul;85(3):502-8.
112. Rodwell, A.W., and E.S. Rodwell. 1978. Relationships between strains of Mycoplasma mycoides subspp. mycoides and capri studied by two-dimensional gel electrophoresis of cell proteins. J Gen Microbiol. 109(2):259-63.
113. Sanchez-Campillo, M., L. Bini, M. Comanducci, R. Raggiaschi, B. Marzocchi, V. Pallini, and G. Ratti, G. 1999. Identification of immunoreactive proteins of Chlamydia trachomatis by Western blot analysis of a two-dimensional electrophoresis map with patient sera. Electrophoresis. 20: 2269-2279.
114. Sayahtaheri, S., and D.L. Cox.1990. The optimal conditions for protein analysis of Treponema pallidum subsp. pallidum by one- and two-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Appl Theor Electrophor. 1990;1(4):213-9.
115. Sazuka, T., M. Yamaguchi, and O. Ohara. 1999. Cyano2Dbase updated: linkage of 234 protein spots to corresponding genes through N-terminal microsequencing. Electrophoresis. 20: 2160-2171.
116. Schmitt, C., C. von Kobbe, A. Bachi, N. Panté, J. Rodrigues, C. Boscheron, G. Rigaut, M. Wilm, B. Séraphin, M. Carmo-Fonseca, and E. Izaurralde. 1999. Dbp5, a DEAD-box protein required for mRNA export, is recruited to the cytoplasmic fibrils of nuclear pore complex via a conserved interaction with CAN/Nup 159p. EMBO J.18: 4332-4347.
117. Selander, R.K., D.A. Caugant, H. Ochman, J.M. Musser, M.N. Gilmour, and T.S. Whittam. 1986. Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics. Appl Environ Microbiol. 51(5):873-84.
118. Shen, Y., F. Xiang, T. Veenstra, E. Fung, and R. Smith. 1999. High-resolution capillary isoelectric focusing of complex protein mixtures from lysates of microorganisms. Anal Chem. 71: 5348-5353.
119. Shevchenko, A., A. Loboda, A. Shevchenko, W. Ens, and K.G. Standing. 2000. MALDI quadruple time-of-flight mass spectrometry: powerful tool for proteomic research. Anal. Chem. 72, 2132-2141.
120. Shevchenko, A. O.N. Jensen, A.V. Podtelejnikov, F. Sagliocco, M. Wilm, O. Vorm , P: Mortensen, A. Shevchenko, H. Boucherie, and M. Mann.1996. Linking genome and proteome by mass spectrometry: large scale identification of yeast proteins from two dimensional gels. Proc. Natl Acad. Sci. USA 93,14440-14445 .
121. Sonnenberg, M.G and J.T. Belisle. 1997. Definition of Mycobacterium tuberculosis culture filtrate proteins by two-dimensional polyacrylamide gel electrophoresis, N-terminal amino acid sequencing, and electrospray mass spectrometry. Infect Immun. Nov;65(11):4515-24.
122. Soskic, V., M. Görlach, S. Poznanovic, F. Boehmer, and J. Godovac-Zimmermann. 1999. Functional proteoma analysis of signal transduction pathways of the platelet-derived growth factor receptor. Biochemistry. 38: 1757-1764.
123. Teixeira-Gomes, A.P., and A. Cloeckaert, G. Bezard, R.A. Bowden, G. Dubray, and M.S. Zygmunt. 1997. Identification and characterization of Brucella ovis immunogenic proteins using two-dimensional electrophoresis and immunoblotting. Electrophoresis. 18(8):1491-7.
124. Tomb, J.F., O. White, A.R. Kerlavage, R.A. Clayton, G.G. Sutton, R.D. Fleischmann, K.A. Ketchum, H.P. Klenk, S. Gill, B.A. Dougherty, K. Nelson, J. Quackenbush, L. Zhou, E.F. Kirkness, S. Peterson, B. Loftus, D. Richardson, R. Dodson, H.G. Khalak, A. Glodek, K. McKenney, L.M. Fitzegerald, N. Lee, M.D. Adams, J.C. Venter, et al. 1997. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature. 7;388(6642):539-47.
125. Tonella, L., B.J. Walsh, J.C. Sanchez, K. Ou, M. R. Wilkins, M, Tyler, S. Frutiger, A. A. Gooley, I. Pescaru, R. D. Appel, J.X. Yan, A. Bairoch, C. Hoogland, F.S. Morch, G.J. Hughes, K. L. Williams, and D. F. Hochstrasser. 1998. '98 Escherichia coli SWISS-2DPAGE database update.Electrophoresis. 19(11):1960-71.
126. Tong, W., A. Link, J. Eng, and J. Yates. 1999. Identification of proteins in complexes by solid-phase microextraction/multistep elution/capillary electrophoresis/tandem mass spectrometry. Anal Chem. 71: 2270-2278.
127. Valdivia, R.H., and S. Falkow. 1997. Fluorescence-based isolation of bacterial genes expressed within host cells. Science. Sep 26;277(5334):2007-11.
128. VanBogelen, R.A., E.E. Schiller, J.D. Thomas, and F.C. Neidhardt. 1999. Diagnosis of cellular states of microbial organisms using proteomics. Electrophoresis. 1999 Aug;20(11):2149-59.
129. VanBogelen, R.A., P.M. Kelley, and F.C. Neidhardt. 1987. Differential induction of heat shock, SOS, and oxidation stress regulons and accumulation of nucleotides in Escherichia coli.J.Bacteriol. 169, 26-32.
130. VanBogelen, R.A., E.R.Olson, B.L. Wanner, and F.C. Neidhardt.1996. Global analysis of proteins synthesized during phosphorus restriction in Escherichia coli. J.Bacteriol. 178, 4344-4366.
131. Vasseur, C., J. Labadie, and M. Hébraud. 1999. Differential protein expression by Pseudomonas fragi submitted to various stresses. Electrophoresis. 20: 2204-2213.
132. Velculescu, V.E., L. Zhang, W. Zhou, J. Vogelstein, M.A. Basrai, D.E. Jr. Bassett, P. Hieter, B. Vogelstein, and K.W. Kinzler. 1997. Characterization of the yeast transcriptome. Cell, 88, 243-251.
133. Walker, G.C., F.C. Neidhardt, R. Curtiss, C. Gross, J.L. Ingraham, E.C.C. Lin, K.B. Low, B. Magasanik, M. Riley, M. Schaechter, and H.E. Umbarger. (Eds.), 1996. Escherichia coli and Salmonella: Cellular and Molecular Biology, ASM Press, Washington DC. 1400-1416.
134. Wang, J., A. Mushegian, and S. Lory. 1996. Large-scale isolation of candidate virulence genes of Pseudomonas aeruginosa by in vivo selection. Proc Natl Acad Sci U S A. Sep 17;93(19):10434-9.
135. Washburn, L.R., and S. Hirsch, S. 1990. Comparison of four Mycoplasma arthritidis strains by enzyme immunoassay, metabolism inhibition, one- and two-dimensional electrophoresis, and immunoblotting. J Clin Microbiol. 28(9):1974-81.
136. Wasinger, V.C., B. Bjellqvist, and I. Humphery-Smith. 1997. Proteomic 'contigs' of Ochrobactrum anthropi, application of extensive pH gradients. Electrophoresis. 18(8):1373-83.
137. Wasinger, V.C., S. J. Cordwell, A. Cerpa-Poljak, J.X. Yan, A.A. Gooley, M.R. Wilkins, M.W. Duncan, R. Harris, K.L. Williams, and I. Humphery-Smith.1995. Progress with gene-product mapping of the Mollicutes: Mycoplasma genitalium. Electrophoresis. 16(7):1090-4.
138. Watson, H.L., M.K.Davidson, N.R. Cox, J.K. Davis, K. Dybvig, and G.H. Cassell. 1987. Protein variability among strains of Mycoplasma pulmonis. Infect Immun. 1987 11:2838-40.
139. Wilkins, M.R., E. Gasteiger, A.A. Gooley, B.R.Herbert, M.P. Molloy, P.A. Binz, K. Ou, J.C. Sanchez, A. Bairoch, K.L. Williams, and D.F. Hochstrasser. 1999. High-throughput mass spectrometric discovery of protein post-translational modifications. J Mol Biol. 11;289(3):645-571
140. Wilkins, M.R., C. Pasquali, R.D. Appel, K. Ou, O. Golaz, J.C. Sanchez, J.X. Yan, A.A. Gooley, G. Hughes, I. Humphery-Smith, K.L. Williams, and Hochstrasser. 1996 From proteins to proteomes: large scale protein identification by two-dimensional electrophoresis and amino acid analysis. Biotechnology (N Y). 14(1):61-5.
141. Wilkins, M.R., J.C. Sanchez, A.A. Gooley, R.D. Appel, I. Humphery-Smith, D.F. Hochstrasser, and K. L Williams. 1996. Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it. Biotechnol Genet Eng Rev. 13:19-50.
142. Wilkins, M.R., and K. L.Williams.1997.Cross-species protein identification using amino acid composition, peptide mass fingerprinting, isoelectric point and molecular mass: a theoretical evaluation. J Theor Biol. 7;186(1):7-15.
143. Wolfhagen, M.J., A. C.Fluit, R. Torensma, M. Jansze, A. F. Kuypers, E. A. Verhage, and J. Verhoef.1993. Comparison of typing methods for Clostridium difficile isolates.J Clin Microbiol. 31(8):2208-11.
144. Zhang, X., C. J. Herring, P.R. Romano, J. Szczepanowska. H. Brzeska, A.G. Hinnebusch, and J. Qin. 1998. Identification of phosphorylation sites in proteins separated by polyacrylamide gel electrophoresis. Anal. Chem. 70, 2050-2059.





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